IL_5A2Q_052

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGA*UCUUUGG

Length

10 nucleotides

Bulged bases

5A2Q|1|2|C|1153, 5A2Q|1|2|U|1155, 5A2Q|1|2|G|1157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50989.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

7

Unit IDs

5A2Q|1|2|C|1091
5A2Q|1|2|G|1092
5A2Q|1|2|A|1093
*
5A2Q|1|2|U|1152
5A2Q|1|2|C|1153
5A2Q|1|2|U|1154
5A2Q|1|2|U|1155
5A2Q|1|2|U|1156
5A2Q|1|2|G|1157
5A2Q|1|2|G|1158

Current chains

Chain 2

18S RRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN US5

Chain L

RIBOSOMAL PROTEIN US17

Chain N

RIBOSOMAL PROTEIN US15

Chain W

RIBOSOMAL PROTEIN US8

Chain X

RIBOSOMAL PROTEIN US12

Chain b

RIBOSOMAL PROTEIN ES27