IL_5A2Q_056

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68313.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-L-cWW

Number of instances in this motif group

9

Unit IDs

5A2Q|1|2|G|1168
5A2Q|1|2|G|1169
5A2Q|1|2|A|1170
5A2Q|1|2|G|1171
5A2Q|1|2|U|1172
5A2Q|1|2|A|1173
5A2Q|1|2|U|1174
5A2Q|1|2|G|1175
*
5A2Q|1|2|U|1186
5A2Q|1|2|G|1187
5A2Q|1|2|A|1188
5A2Q|1|2|A|1189
5A2Q|1|2|A|1190
5A2Q|1|2|C|1191

Current chains

Chain 2

18S RRNA

Nearby chains

Chain X

RIBOSOMAL PROTEIN US12

Chain h

RIBOSOMAL PROTEIN EL41