IL_5A2Q_059

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

5A2Q|1|2|C|1215, 5A2Q|1|2|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42675.1

Basepair signature

cWW-tWH-cSH-L-cWS-cWW

Number of instances in this motif group

38

Unit IDs

5A2Q|1|2|A|1214
5A2Q|1|2|C|1215
5A2Q|1|2|C|1216
5A2Q|1|2|A|1217
*
5A2Q|1|2|U|1681
5A2Q|1|2|C|1682
5A2Q|1|2|C|1683
5A2Q|1|2|C|1684
5A2Q|1|2|U|1685

Current chains

Chain 2

18S RRNA

Nearby chains

Chain F

RIBOSOMAL PROTEIN US7

Chain Q

RIBOSOMAL PROTEIN US9

Chain U

RIBOSOMAL PROTEIN US10

Chain a

RIBOSOMAL PROTEIN ES26

Chain c

RIBOSOMAL PROTEIN ES28