IL_5A2Q_076

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUC*GUAACC

Length

9 nucleotides

Bulged bases

5A2Q|1|2|A|1580

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5A2Q|1|2|G|1550
5A2Q|1|2|U|1551
5A2Q|1|2|C|1558
*
5A2Q|1|2|G|1577
5A2Q|1|2|U|1578
5A2Q|1|2|A|1579
5A2Q|1|2|A|1580
5A2Q|1|2|C|1581
5A2Q|1|2|C|1582

Current chains

Chain 2

18S RRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN US3

Chain U

RIBOSOMAL PROTEIN US10

Chain d

RIBOSOMAL PROTEIN US14