IL_5A2Q_078

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99176.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5A2Q|1|2|G|1604
5A2Q|1|2|G|1605
5A2Q|1|2|G|1606
5A2Q|1|2|A|1607
5A2Q|1|2|U|1608
5A2Q|1|2|C|1609
5A2Q|1|2|G|1610
*
5A2Q|1|2|C|1629
5A2Q|1|2|A|1630
5A2Q|1|2|U|1631
5A2Q|1|2|G|1632
5A2Q|1|2|A|1633
5A2Q|1|2|A|1634
5A2Q|1|2|C|1635

Current chains

Chain 2

18S RRNA

Nearby chains

Chain S

RIBOSOMAL PROTEIN US13

Chain T

RIBOSOMAL PROTEIN ES19