3D structure

PDB id
5A2Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HCV IRES bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GCCC*GUAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_99283.1
Basepair signature
cWW-cWW-cSW-cWW-cSH-cWW
Number of instances in this motif group
19

Unit IDs

5A2Q|1|2|G|1702
5A2Q|1|2|C|1703
5A2Q|1|2|C|1704
5A2Q|1|2|C|1705
*
5A2Q|1|2|G|1829
5A2Q|1|2|U|1830
5A2Q|1|2|A|1831
5A2Q|1|2|A|1832
5A2Q|1|2|C|1833

Current chains

Chain 2
18S RRNA

Nearby chains

Chain 3
Internal ribosome entry site; IRES
Chain h
RIBOSOMAL PROTEIN EL41

Coloring options:

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