IL_5A2Q_080
3D structure
- PDB id
- 5A2Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the human ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99283.1
- Basepair signature
- cWW-cWW-cSW-cWW-cSH-cWW
- Number of instances in this motif group
- 19
Unit IDs
5A2Q|1|2|G|1702
5A2Q|1|2|C|1703
5A2Q|1|2|C|1704
5A2Q|1|2|C|1705
*
5A2Q|1|2|G|1829
5A2Q|1|2|U|1830
5A2Q|1|2|A|1831
5A2Q|1|2|A|1832
5A2Q|1|2|C|1833
Current chains
- Chain 2
- 18S RRNA
Nearby chains
- Chain 3
- Internal ribosome entry site; IRES
- Chain h
- RIBOSOMAL PROTEIN EL41
Coloring options: