IL_5A2Q_103

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29698.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

21

Unit IDs

5A2Q|1|3|C|255
5A2Q|1|3|G|256
5A2Q|1|3|A|257
5A2Q|1|3|G|258
5A2Q|1|3|U|259
5A2Q|1|3|A|260
5A2Q|1|3|G|261
*
5A2Q|1|3|C|272
5A2Q|1|3|G|273
5A2Q|1|3|A|274
5A2Q|1|3|A|275
5A2Q|1|3|A|276
5A2Q|1|3|G|277

Current chains

Chain 3

HCV IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA