IL_5A2Q_104

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

5A2Q|1|2|G|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5A2Q_104 not in the Motif Atlas

Geometric match to IL_3SZX_001

Geometric discrepancy: 0.3526

The information below is about IL_3SZX_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5A2Q|1|2|G|535
5A2Q|1|2|A|536
5A2Q|1|2|C|537
*
5A2Q|1|2|G|546
5A2Q|1|2|G|547
5A2Q|1|2|C|548
5A2Q|1|2|C|549

Current chains

Chain 2

18S RRNA

Nearby chains

Chain e

RIBOSOMAL PROTEIN ES30