IL_5A2Q_106

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACAGGAUUG*CUCGAUUC

Length

18 nucleotides

Bulged bases

5A2Q|1|2|G|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5A2Q|1|2|G|1281
5A2Q|1|2|A|1282
5A2Q|1|2|C|1283
5A2Q|1|2|A|1284
5A2Q|1|2|G|1285
5A2Q|1|2|G|1286
5A2Q|1|2|A|1287
5A2Q|1|2|U|1288
5A2Q|1|2|U|1289
5A2Q|1|2|G|1290
*
5A2Q|1|2|C|1309
5A2Q|1|2|U|1310
5A2Q|1|2|C|1311
5A2Q|1|2|G|1312
5A2Q|1|2|A|1313
5A2Q|1|2|U|1314
5A2Q|1|2|U|1315
5A2Q|1|2|C|1316

Current chains

Chain 2

18S RRNA

Nearby chains

Chain K

RIBOSOMAL PROTEIN ES10

Chain M

RIBOSOMAL PROTEIN ES12

Chain d

RIBOSOMAL PROTEIN US14

Chain f

RIBOSOMAL PROTEIN ES31