IL_5A2Q_108
3D structure
- PDB id
- 5A2Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the human ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCUCAGCGUG*CCGUUGAACCC
- Length
- 21 nucleotides
- Bulged bases
- 5A2Q|1|2|U|1585, 5A2Q|1|2|G|1587
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5A2Q|1|2|G|1541
5A2Q|1|2|C|1542
5A2Q|1|2|U|1543
5A2Q|1|2|C|1544
5A2Q|1|2|A|1545
5A2Q|1|2|G|1546
5A2Q|1|2|C|1547
5A2Q|1|2|G|1548
5A2Q|1|2|U|1549
5A2Q|1|2|G|1550
*
5A2Q|1|2|C|1582
5A2Q|1|2|C|1583
5A2Q|1|2|G|1584
5A2Q|1|2|U|1585
5A2Q|1|2|U|1586
5A2Q|1|2|G|1587
5A2Q|1|2|A|1588
5A2Q|1|2|A|1589
5A2Q|1|2|C|1590
5A2Q|1|2|C|1591
5A2Q|1|2|C|1592
Current chains
- Chain 2
- 18S RRNA
Nearby chains
- Chain D
- RIBOSOMAL PROTEIN US3
- Chain F
- RIBOSOMAL PROTEIN US7
- Chain Q
- RIBOSOMAL PROTEIN US9
- Chain T
- RIBOSOMAL PROTEIN ES19
- Chain U
- RIBOSOMAL PROTEIN US10
- Chain Z
- RIBOSOMAL PROTEIN ES25
- Chain d
- RIBOSOMAL PROTEIN US14
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