IL_5A2Q_110

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

5A2Q|1|2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5A2Q_110 not in the Motif Atlas

Homologous match to IL_8CRE_424

Geometric discrepancy: 0.1549

The information below is about IL_8CRE_424

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

5A2Q|1|2|G|665
5A2Q|1|2|U|666
5A2Q|1|2|U|667
5A2Q|1|2|A|668
5A2Q|1|2|A|669
5A2Q|1|2|A|670
5A2Q|1|2|A|671
*
5A2Q|1|2|U|1161
5A2Q|1|2|C|1162

Current chains

Chain 2

18S RRNA

Nearby chains

Chain X

RIBOSOMAL PROTEIN US12

Chain a

RIBOSOMAL PROTEIN ES26