IL_5A2Q_111

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

5A2Q|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5A2Q_111 not in the Motif Atlas

Geometric match to IL_3NDB_005

Geometric discrepancy: 0.3431

The information below is about IL_3NDB_005

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5A2Q|1|2|G|925
5A2Q|1|2|A|926
*
5A2Q|1|2|U|1015
5A2Q|1|2|U|1016
5A2Q|1|2|U|1017

Current chains

Chain 2

18S RRNA

Nearby chains

Chain N

RIBOSOMAL PROTEIN US15

Chain b

RIBOSOMAL PROTEIN ES27