IL_5AA0_022
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CUGAC*GGUGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AA0_022 not in the Motif Atlas
- Homologous match to IL_9DFE_025
- Geometric discrepancy: 0.5451
- The information below is about IL_9DFE_025
- Detailed Annotation
- Stack outside cWW
- Broad Annotation
- Stack outside cWW
- Motif group
- IL_08938.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
5AA0|1|AA|C|846||||P_1
5AA0|1|AA|U|847||||P_1
5AA0|1|AA|G|848||||P_1
5AA0|1|AA|A|849||||P_1
5AA0|1|AA|C|850||||P_1
*
5AA0|1|AA|G|928||||P_1
5AA0|1|AA|G|929||||P_1
5AA0|1|AA|U|930||||P_1
5AA0|1|AA|G|931||||P_1
5AA0|1|AA|G|932||||P_1
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AZ
- 50S ribosomal protein L30
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