IL_5AA0_041

3D structure

PDB id

5AA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GAC*GGC

Length

6 nucleotides

Bulged bases

5AA0|1|AA|A|1220||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AA0_041 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.3635

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5AA0|1|AA|G|1219||||P_1
5AA0|1|AA|A|1220||||P_1
5AA0|1|AA|C|1221||||P_1
*
5AA0|1|AA|G|1228||||P_1
5AA0|1|AA|G|1229||||P_1
5AA0|1|AA|C|1230||||P_1

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AR

50S ribosomal protein L20

Chain AS

50S ribosomal protein L21