IL_5AA0_063

3D structure

PDB id

5AA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

5AA0|1|AA|A|1900||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AA0_063 not in the Motif Atlas

Homologous match to IL_4WF9_071

Geometric discrepancy: 0.2449

The information below is about IL_4WF9_071

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

5AA0|1|AA|U|1841||||P_1
5AA0|1|AA|G|1842||||P_1
*
5AA0|1|AA|U|1898||||P_1
5AA0|1|AA|G|1899||||P_1
5AA0|1|AA|A|1900||||P_1
5AA0|1|AA|A|1901||||P_1

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2