IL_5AA0_067
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 5AA0|1|AA|A|1938||||P_1, 5AA0|1|AA|U|1944||||P_1, 5AA0|1|AA|U|1963||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AA0_067 not in the Motif Atlas
- Homologous match to IL_7A0S_072
- Geometric discrepancy: 0.2996
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
5AA0|1|AA|C|1934||||P_1
5AA0|1|AA|G|1935||||P_1
5AA0|1|AA|A|1936||||P_1
5AA0|1|AA|A|1937||||P_1
5AA0|1|AA|A|1938||||P_1
5AA0|1|AA|U|1939||||P_1
5AA0|1|AA|U|1940||||P_1
5AA0|1|AA|C|1941||||P_1
5AA0|1|AA|C|1942||||P_1
5AA0|1|AA|U|1943||||P_1
5AA0|1|AA|U|1944||||P_1
5AA0|1|AA|G|1945||||P_1
*
5AA0|1|AA|C|1961||||P_1
5AA0|1|AA|C|1962||||P_1
5AA0|1|AA|U|1963||||P_1
5AA0|1|AA|G|1964||||P_1
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AX
- 50S ribosomal protein L27
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BD
- Transfer RNA; tRNA
- Chain BZ
- GTP-binding protein
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