IL_5AA0_079
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CGAG*CGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AA0_079 not in the Motif Atlas
- Homologous match to IL_4WF9_087
- Geometric discrepancy: 0.1706
- The information below is about IL_4WF9_087
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
5AA0|1|AA|C|2350||||P_1
5AA0|1|AA|G|2351||||P_1
5AA0|1|AA|A|2352||||P_1
5AA0|1|AA|G|2353||||P_1
*
5AA0|1|AA|C|2364||||P_1
5AA0|1|AA|G|2365||||P_1
5AA0|1|AA|A|2366||||P_1
5AA0|1|AA|G|2367||||P_1
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AX
- 50S ribosomal protein L27
- Chain Ae
- 50S ribosomal protein L35
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