IL_5AA0_099
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- UGC*GUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AA0_099 not in the Motif Atlas
- Geometric match to IL_4V88_424
- Geometric discrepancy: 0.3886
- The information below is about IL_4V88_424
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
5AA0|1|AB|U|8||||P_1
5AA0|1|AB|G|9||||P_1
5AA0|1|AB|C|10||||P_1
*
5AA0|1|AB|G|110||||P_1
5AA0|1|AB|U|111||||P_1
5AA0|1|AB|G|112||||P_1
Current chains
- Chain AB
- 5S ribosomal RNA
Nearby chains
- Chain AP
- 50S ribosomal protein L18
- Chain AX
- 50S ribosomal protein L27
Coloring options: