IL_5AA0_099

3D structure

PDB id

5AA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UGC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AA0_099 not in the Motif Atlas

Geometric match to IL_4V88_424

Geometric discrepancy: 0.3886

The information below is about IL_4V88_424

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5AA0|1|AB|U|8||||P_1
5AA0|1|AB|G|9||||P_1
5AA0|1|AB|C|10||||P_1
*
5AA0|1|AB|G|110||||P_1
5AA0|1|AB|U|111||||P_1
5AA0|1|AB|G|112||||P_1

Current chains

Chain AB

5S ribosomal RNA

Nearby chains

Chain AP

50S ribosomal protein L18

Chain AX

50S ribosomal protein L27