IL_5AA0_100

3D structure

PDB id

5AA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

5AA0|1|AB|A|66||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AA0_100 not in the Motif Atlas

Homologous match to IL_7RQB_111

Geometric discrepancy: 0.2724

The information below is about IL_7RQB_111

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

5AA0|1|AB|C|17||||P_1
5AA0|1|AB|G|18||||P_1
*
5AA0|1|AB|C|65||||P_1
5AA0|1|AB|A|66||||P_1
5AA0|1|AB|G|67||||P_1

Current chains

Chain AB

5S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AP

50S ribosomal protein L18

Chain AW

50S ribosomal protein L25