IL_5AA0_101
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- UGGAACCA*UGAAACG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AA0_101 not in the Motif Atlas
- Homologous match to IL_4WF9_113
- Geometric discrepancy: 0.3995
- The information below is about IL_4WF9_113
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_19048.1
- Basepair signature
- cWW-L-R-L-R-L-cSH-L-R-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5AA0|1|AB|U|22||||P_1
5AA0|1|AB|G|23||||P_1
5AA0|1|AB|G|24||||P_1
5AA0|1|AB|A|25||||P_1
5AA0|1|AB|A|26||||P_1
5AA0|1|AB|C|27||||P_1
5AA0|1|AB|C|28||||P_1
5AA0|1|AB|A|29||||P_1
*
5AA0|1|AB|U|55||||P_1
5AA0|1|AB|G|56||||P_1
5AA0|1|AB|A|57||||P_1
5AA0|1|AB|A|58||||P_1
5AA0|1|AB|A|59||||P_1
5AA0|1|AB|C|60||||P_1
5AA0|1|AB|G|61||||P_1
Current chains
- Chain AB
- 5S ribosomal RNA
Nearby chains
- Chain AG
- 50S ribosomal protein L5
- Chain AP
- 50S ribosomal protein L18
Coloring options: