IL_5AA0_104
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AA0_104 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.2962
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5AA0|1|AB|C|71||||P_1
5AA0|1|AB|G|72||||P_1
5AA0|1|AB|A|73||||P_1
5AA0|1|AB|U|74||||P_1
5AA0|1|AB|G|75||||P_1
5AA0|1|AB|G|76||||P_1
5AA0|1|AB|U|77||||P_1
5AA0|1|AB|A|78||||P_1
5AA0|1|AB|C|79||||P_1
*
5AA0|1|AB|G|97||||P_1
5AA0|1|AB|G|98||||P_1
5AA0|1|AB|A|99||||P_1
5AA0|1|AB|G|100||||P_1
5AA0|1|AB|A|101||||P_1
5AA0|1|AB|G|102||||P_1
5AA0|1|AB|U|103||||P_1
5AA0|1|AB|A|104||||P_1
5AA0|1|AB|G|105||||P_1
Current chains
- Chain AB
- 5S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AN
- 50S ribosomal protein L16
- Chain AW
- 50S ribosomal protein L25
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