IL_5AA0_146

3D structure

PDB id

5AA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

5AA0|1|BA|U|1196||||P_1

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AA0_146 not in the Motif Atlas

Geometric match to IL_2PN3_003

Geometric discrepancy: 0.2768

The information below is about IL_2PN3_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

5AA0|1|BA|C|1060||||P_1
5AA0|1|BA|G|1061||||P_1
*
5AA0|1|BA|C|1195||||P_1
5AA0|1|BA|U|1196||||P_1
5AA0|1|BA|G|1197||||P_1

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BD

Transfer RNA; tRNA

Chain BG

30S ribosomal protein S3

Chain BI

30S ribosomal protein S5

Chain BM

30S ribosomal protein S9

Chain BN

30S ribosomal protein S10

Chain BR

30S ribosomal protein S14 type Z