IL_5AA0_146
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CG*CUG
- Length
- 5 nucleotides
- Bulged bases
- 5AA0|1|BA|U|1196||||P_1
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AA0_146 not in the Motif Atlas
- Geometric match to IL_2PN3_003
- Geometric discrepancy: 0.2768
- The information below is about IL_2PN3_003
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 129
Unit IDs
5AA0|1|BA|C|1060||||P_1
5AA0|1|BA|G|1061||||P_1
*
5AA0|1|BA|C|1195||||P_1
5AA0|1|BA|U|1196||||P_1
5AA0|1|BA|G|1197||||P_1
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BD
- Transfer RNA; tRNA
- Chain BG
- 30S ribosomal protein S3
- Chain BI
- 30S ribosomal protein S5
- Chain BM
- 30S ribosomal protein S9
- Chain BN
- 30S ribosomal protein S10
- Chain BR
- 30S ribosomal protein S14 type Z
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