IL_5ADY_005
3D structure
- PDB id
- 5ADY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of the 50S ribosome subunit bound with HflX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- UGU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ADY_005 not in the Motif Atlas
- Geometric match to IL_1L9A_004
- Geometric discrepancy: 0.2574
- The information below is about IL_1L9A_004
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_85599.2
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
5ADY|1|A|U|80
5ADY|1|A|G|81
5ADY|1|A|U|82
*
5ADY|1|A|A|94
5ADY|1|A|U|95
5ADY|1|A|G|96
Current chains
- Chain A
- 5S RRNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S RIBOSOMAL PROTEIN L16
- Chain V
- 50S RIBOSOMAL PROTEIN L25
- Chain Z
- 50S RIBOSOMAL PROTEIN L30
Coloring options: