IL_5ADY_021

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AUA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUA,UAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ADY_021 not in the Motif Atlas

Geometric match to IL_5Y7M_007

Geometric discrepancy: 0.249

The information below is about IL_5Y7M_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5ADY|1|B|A|590
5ADY|1|B|U|591
5ADY|1|B|A|592
*
5ADY|1|B|U|665
5ADY|1|B|A|666
5ADY|1|B|U|667

Current chains

Chain B

23S RRNA

Nearby chains

Chain 3

50S RIBOSOMAL PROTEIN L35

Chain E

50S RIBOSOMAL PROTEIN L4

Chain L

50S RIBOSOMAL PROTEIN L15