IL_5ADY_024

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGG,CCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ADY_024 not in the Motif Atlas

Geometric match to IL_1YZ9_001

Geometric discrepancy: 0.1565

The information below is about IL_1YZ9_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5ADY|1|B|C|680
5ADY|1|B|G|681
5ADY|1|B|G|682
*
5ADY|1|B|C|795
5ADY|1|B|C|796
5ADY|1|B|G|797

Current chains

Chain B

23S RRNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain E

50S RIBOSOMAL PROTEIN L4