IL_5ADY_029

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GACU*AGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ADY_029 not in the Motif Atlas

Geometric match to IL_4V9F_028

Geometric discrepancy: 0.372

The information below is about IL_4V9F_028

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

5ADY|1|B|G|738
5ADY|1|B|A|739
5ADY|1|B|C|740
5ADY|1|B|U|741
*
5ADY|1|B|A|756
5ADY|1|B|G|757
5ADY|1|B|C|758

Current chains

Chain B

23S RRNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34