IL_5ADY_040
3D structure
- PDB id
- 5ADY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of the 50S ribosome subunit bound with HflX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GCCA*UGC
- Length
- 7 nucleotides
- Bulged bases
- 5ADY|1|B|C|995
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ADY_040 not in the Motif Atlas
- Geometric match to IL_7A0S_041
- Geometric discrepancy: 0.2697
- The information below is about IL_7A0S_041
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_42997.5
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 23
Unit IDs
5ADY|1|B|G|993
5ADY|1|B|C|994
5ADY|1|B|C|995
5ADY|1|B|A|996
*
5ADY|1|B|U|1159
5ADY|1|B|G|1160
5ADY|1|B|C|1161
Current chains
- Chain B
- 23S RRNA
Nearby chains
- Chain J
- 50S RIBOSOMAL PROTEIN L13
- Chain Q
- 50S RIBOSOMAL PROTEIN L20
- Chain R
- 50S RIBOSOMAL PROTEIN L21
- Chain Z
- 50S RIBOSOMAL PROTEIN L30
Coloring options: