IL_5ADY_042

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUCCCAAAG*CAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ADY_042 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.1952

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5ADY|1|B|G|1003
5ADY|1|B|U|1004
5ADY|1|B|C|1005
5ADY|1|B|C|1006
5ADY|1|B|C|1007
5ADY|1|B|A|1008
5ADY|1|B|A|1009
5ADY|1|B|A|1010
5ADY|1|B|G|1011
*
5ADY|1|B|C|1150
5ADY|1|B|A|1151
5ADY|1|B|C|1152

Current chains

Chain B

23S RRNA

Nearby chains

Chain J

50S RIBOSOMAL PROTEIN L13

Chain Q

50S RIBOSOMAL PROTEIN L20