IL_5ADY_043

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

5ADY|1|B|U|1012

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ADY_043 not in the Motif Atlas

Geometric match to IL_7RQB_038

Geometric discrepancy: 0.1759

The information below is about IL_7RQB_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

5ADY|1|B|G|1011
5ADY|1|B|U|1012
5ADY|1|B|C|1013
*
5ADY|1|B|G|1149
5ADY|1|B|C|1150

Current chains

Chain B

23S RRNA

Nearby chains

Chain J

50S RIBOSOMAL PROTEIN L13

Chain Q

50S RIBOSOMAL PROTEIN L20