IL_5ADY_044

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

5ADY|1|B|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ADY_044 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.2266

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

5ADY|1|B|U|1018
5ADY|1|B|U|1019
5ADY|1|B|A|1020
5ADY|1|B|A|1021
5ADY|1|B|G|1022
5ADY|1|B|U|1023
5ADY|1|B|G|1024
*
5ADY|1|B|C|1140
5ADY|1|B|U|1141
5ADY|1|B|A|1142
5ADY|1|B|A|1143
5ADY|1|B|A|1144

Current chains

Chain B

23S RRNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain J

50S RIBOSOMAL PROTEIN L13