IL_5ADY_076

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5ADY|1|B|G|1699

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ADY_076 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1854

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5ADY|1|B|C|1686
5ADY|1|B|G|1687
5ADY|1|B|U|1688
5ADY|1|B|A|1689
5ADY|1|B|A|1690
5ADY|1|B|C|1691
*
5ADY|1|B|G|1696
5ADY|1|B|G|1697
5ADY|1|B|A|1698
5ADY|1|B|G|1699
5ADY|1|B|A|1700
5ADY|1|B|A|1701
5ADY|1|B|G|1702

Current chains

Chain B

23S RRNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2