IL_5ADY_114

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AUG*CAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUG,CAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ADY_114 not in the Motif Atlas

Geometric match to IL_4LFB_063

Geometric discrepancy: 0.2096

The information below is about IL_4LFB_063

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5ADY|1|B|A|2547
5ADY|1|B|U|2548
5ADY|1|B|G|2549
*
5ADY|1|B|C|2559
5ADY|1|B|A|2560
5ADY|1|B|U|2561

Current chains

Chain B

23S RRNA

Nearby chains

Chain K

50S RIBOSOMAL PROTEIN L14