IL_5ADY_141

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UUUC*GAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ADY_141 not in the Motif Atlas

Geometric match to IL_5C5W_003

Geometric discrepancy: 0.2853

The information below is about IL_5C5W_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

52

Unit IDs

5ADY|1|B|U|870
5ADY|1|B|U|871
5ADY|1|B|U|872
5ADY|1|B|C|873
*
5ADY|1|B|G|904
5ADY|1|B|A|905
5ADY|1|B|U|906
5ADY|1|B|G|907

Current chains

Chain B

23S RRNA

Nearby chains

Chain M

50S RIBOSOMAL PROTEIN L16