IL_5ADY_145

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

5ADY|1|B|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ADY_145 not in the Motif Atlas

Geometric match to IL_1G1X_002

Geometric discrepancy: 0.256

The information below is about IL_1G1X_002

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

5ADY|1|B|G|1087
5ADY|1|B|A|1088
5ADY|1|B|A|1089
5ADY|1|B|A|1090
*
5ADY|1|B|U|1101
5ADY|1|B|C|1102

Current chains

Chain B

23S RRNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain I

50S RIBOSOMAL PROTEIN L11