IL_5ADY_158

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UUGAGCCUUGAUGUGUAGGAUAGGUG*CACCCUUUAAUGUUUGA

Length

43 nucleotides

Bulged bases

5ADY|1|B|U|2111, 5ADY|1|B|G|2112, 5ADY|1|B|U|2113, 5ADY|1|B|G|2116, 5ADY|1|B|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ADY|1|B|U|2098
5ADY|1|B|U|2099
5ADY|1|B|G|2100
5ADY|1|B|A|2101
5ADY|1|B|G|2102
5ADY|1|B|C|2103
5ADY|1|B|C|2104
5ADY|1|B|U|2105
5ADY|1|B|U|2106
5ADY|1|B|G|2107
5ADY|1|B|A|2108
5ADY|1|B|U|2109
5ADY|1|B|G|2110
5ADY|1|B|U|2111
5ADY|1|B|G|2112
5ADY|1|B|U|2113
5ADY|1|B|A|2114
5ADY|1|B|G|2115
5ADY|1|B|G|2116
5ADY|1|B|A|2117
5ADY|1|B|U|2118
5ADY|1|B|A|2119
5ADY|1|B|G|2120
5ADY|1|B|G|2121
5ADY|1|B|U|2122
5ADY|1|B|G|2123
*
5ADY|1|B|C|2175
5ADY|1|B|A|2176
5ADY|1|B|C|2177
5ADY|1|B|C|2178
5ADY|1|B|C|2179
5ADY|1|B|U|2180
5ADY|1|B|U|2181
5ADY|1|B|U|2182
5ADY|1|B|A|2183
5ADY|1|B|A|2184
5ADY|1|B|U|2185
5ADY|1|B|G|2186
5ADY|1|B|U|2187
5ADY|1|B|U|2188
5ADY|1|B|U|2189
5ADY|1|B|G|2190
5ADY|1|B|A|2191

Current chains

Chain B

23S RRNA

Nearby chains

Chain 5

50S RIBOSOMAL PROTEIN L1

Chain H

50S RIBOSOMAL PROTEIN L9