IL_5ADY_159

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGGAGGCUUUGAAGUGUG*UGCAUGGAGCCGACCUUGAAAUACC

Length

43 nucleotides

Bulged bases

5ADY|1|B|U|2132, 5ADY|1|B|G|2157, 5ADY|1|B|A|2158, 5ADY|1|B|G|2162, 5ADY|1|B|A|2163, 5ADY|1|B|A|2169, 5ADY|1|B|A|2170

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ADY|1|B|G|2123
5ADY|1|B|G|2124
5ADY|1|B|G|2125
5ADY|1|B|A|2126
5ADY|1|B|G|2127
5ADY|1|B|G|2128
5ADY|1|B|C|2129
5ADY|1|B|U|2130
5ADY|1|B|U|2131
5ADY|1|B|U|2132
5ADY|1|B|G|2133
5ADY|1|B|A|2134
5ADY|1|B|A|2135
5ADY|1|B|G|2136
5ADY|1|B|U|2137
5ADY|1|B|G|2138
5ADY|1|B|U|2139
5ADY|1|B|G|2140
*
5ADY|1|B|U|2151
5ADY|1|B|G|2152
5ADY|1|B|C|2153
5ADY|1|B|A|2154
5ADY|1|B|U|2155
5ADY|1|B|G|2156
5ADY|1|B|G|2157
5ADY|1|B|A|2158
5ADY|1|B|G|2159
5ADY|1|B|C|2160
5ADY|1|B|C|2161
5ADY|1|B|G|2162
5ADY|1|B|A|2163
5ADY|1|B|C|2164
5ADY|1|B|C|2165
5ADY|1|B|U|2166
5ADY|1|B|U|2167
5ADY|1|B|G|2168
5ADY|1|B|A|2169
5ADY|1|B|A|2170
5ADY|1|B|A|2171
5ADY|1|B|U|2172
5ADY|1|B|A|2173
5ADY|1|B|C|2174
5ADY|1|B|C|2175

Current chains

Chain B

23S RRNA

Nearby chains

Chain 5

50S RIBOSOMAL PROTEIN L1