IL_5ADY_174

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

5ADY|1|B|A|2439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ADY_174 not in the Motif Atlas

Homologous match to IL_5J7L_324

Geometric discrepancy: 0.4735

The information below is about IL_5J7L_324

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

5ADY|1|B|A|2070
5ADY|1|B|A|2071
*
5ADY|1|B|U|2438
5ADY|1|B|A|2439
5ADY|1|B|C|2440
5ADY|1|B|U|2441

Current chains

Chain B

23S RRNA

Nearby chains

Chain 6

GTPASE HFLX

Chain C

50S RIBOSOMAL PROTEIN L2

Chain E

50S RIBOSOMAL PROTEIN L4