IL_5ADY_177

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GCGAG*CGAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ADY_177 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.3409

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

5ADY|1|B|G|2349
5ADY|1|B|C|2350
5ADY|1|B|G|2351
5ADY|1|B|A|2352
5ADY|1|B|G|2353
*
5ADY|1|B|C|2364
5ADY|1|B|G|2365
5ADY|1|B|A|2366
5ADY|1|B|G|2367
5ADY|1|B|C|2368

Current chains

Chain B

23S RRNA

Nearby chains

Chain 1

50S RIBOSOMAL PROTEIN L33

Chain 3

50S RIBOSOMAL PROTEIN L35

Chain W

50S RIBOSOMAL PROTEIN L27