IL_5AFI_013
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 5AFI|1|A|A|504||||P_1, 5AFI|1|A|A|508||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AFI_013 not in the Motif Atlas
- Homologous match to IL_5J7L_255
- Geometric discrepancy: 0.0748
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
5AFI|1|A|G|481||||P_1
5AFI|1|A|A|482||||P_1
5AFI|1|A|A|483||||P_1
5AFI|1|A|C|484||||P_1
*
5AFI|1|A|G|496||||P_1
5AFI|1|A|A|497||||P_1
5AFI|1|A|G|498||||P_1
5AFI|1|A|U|499||||P_1
5AFI|1|A|G|500||||P_1
5AFI|1|A|A|501||||P_1
5AFI|1|A|A|502||||P_1
5AFI|1|A|A|503||||P_1
5AFI|1|A|A|504||||P_1
5AFI|1|A|A|505||||P_1
5AFI|1|A|G|506||||P_1
5AFI|1|A|A|507||||P_1
5AFI|1|A|A|508||||P_1
5AFI|1|A|C|509||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain S
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L24
Coloring options: