IL_5AFI_015
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGC*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: CGC,GCG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AFI_015 not in the Motif Atlas
- Geometric match to IL_3GM7_001
- Geometric discrepancy: 0.1332
- The information below is about IL_3GM7_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
5AFI|1|A|C|542||||P_1
5AFI|1|A|G|543||||P_1
5AFI|1|A|C|544||||P_1
*
5AFI|1|A|G|549||||P_1
5AFI|1|A|C|550||||P_1
5AFI|1|A|G|551||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain J
- 50S ribosomal protein L13
- Chain R
- 50S ribosomal protein L21
Coloring options: