IL_5AFI_033
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAAG*CAACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AFI_033 not in the Motif Atlas
- Homologous match to IL_5J7L_274
- Geometric discrepancy: 0.2237
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
5AFI|1|A|G|875||||P_1
5AFI|1|A|C|876||||P_1
5AFI|1|A|A|877||||P_1
5AFI|1|A|A|878||||P_1
5AFI|1|A|G|879||||P_1
*
5AFI|1|A|C|898||||P_1
5AFI|1|A|A|899||||P_1
5AFI|1|A|A|900||||P_1
5AFI|1|A|C|901||||P_1
5AFI|1|A|C|902||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L16
Coloring options: