IL_5AFI_040
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUAAGUG*CUAAA
- Length
- 12 nucleotides
- Bulged bases
- 5AFI|1|A|A|1143||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AFI_040 not in the Motif Atlas
- Homologous match to IL_4WF9_039
- Geometric discrepancy: 0.1742
- The information below is about IL_4WF9_039
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
5AFI|1|A|U|1018||||P_1
5AFI|1|A|U|1019||||P_1
5AFI|1|A|A|1020||||P_1
5AFI|1|A|A|1021||||P_1
5AFI|1|A|G|1022||||P_1
5AFI|1|A|U|1023||||P_1
5AFI|1|A|G|1024||||P_1
*
5AFI|1|A|C|1140||||P_1
5AFI|1|A|U|1141||||P_1
5AFI|1|A|A|1142||||P_1
5AFI|1|A|A|1143||||P_1
5AFI|1|A|A|1144||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain J
- 50S ribosomal protein L13
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