IL_5AFI_046
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAG*CAC
- Length
- 36 nucleotides
- Bulged bases
- 5AFI|1|A|U|1061||||P_1, 5AFI|1|A|U|1066||||P_1, 5AFI|1|A|A|1070||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AFI|1|A|G|1055||||P_1
5AFI|1|A|G|1056||||P_1
5AFI|1|A|A|1057||||P_1
5AFI|1|A|U|1058||||P_1
5AFI|1|A|G|1059||||P_1
5AFI|1|A|U|1060||||P_1
5AFI|1|A|U|1061||||P_1
5AFI|1|A|G|1062||||P_1
5AFI|1|A|G|1063||||P_1
5AFI|1|A|C|1064||||P_1
5AFI|1|A|U|1065||||P_1
5AFI|1|A|U|1066||||P_1
5AFI|1|A|A|1067||||P_1
5AFI|1|A|G|1068||||P_1
5AFI|1|A|A|1069||||P_1
5AFI|1|A|A|1070||||P_1
5AFI|1|A|G|1071||||P_1
5AFI|1|A|C|1072||||P_1
5AFI|1|A|A|1073||||P_1
5AFI|1|A|G|1074||||P_1
5AFI|1|A|C|1075||||P_1
5AFI|1|A|C|1076||||P_1
5AFI|1|A|A|1077||||P_1
5AFI|1|A|U|1078||||P_1
5AFI|1|A|C|1079||||P_1
5AFI|1|A|A|1080||||P_1
5AFI|1|A|U|1081||||P_1
5AFI|1|A|U|1082||||P_1
5AFI|1|A|U|1083||||P_1
5AFI|1|A|A|1084||||P_1
5AFI|1|A|A|1085||||P_1
5AFI|1|A|A|1086||||P_1
5AFI|1|A|G|1087||||P_1
*
5AFI|1|A|C|1102||||P_1
5AFI|1|A|A|1103||||P_1
5AFI|1|A|C|1104||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain 5
- 50S ribosomal protein L10
- Chain I
- 50S ribosomal protein L11
- Chain M
- 50S ribosomal protein L16
- Chain y
- Transfer RNA; tRNA
Coloring options: