IL_5AFI_061
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGUAGG*CUGAGG
- Length
- 12 nucleotides
- Bulged bases
- 5AFI|1|A|G|1475||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AFI_061 not in the Motif Atlas
- Geometric match to IL_8ZA4_003
- Geometric discrepancy: 0.3424
- The information below is about IL_8ZA4_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_35186.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5AFI|1|A|U|1474||||P_1
5AFI|1|A|G|1475||||P_1
5AFI|1|A|U|1476||||P_1
5AFI|1|A|A|1477||||P_1
5AFI|1|A|G|1478||||P_1
5AFI|1|A|G|1479||||P_1
*
5AFI|1|A|C|1512||||P_1
5AFI|1|A|U|1513||||P_1
5AFI|1|A|G|1514||||P_1
5AFI|1|A|A|1515||||P_1
5AFI|1|A|G|1516||||P_1
5AFI|1|A|G|1517||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: