IL_5AFI_066
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAGAAC*GAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AFI_066 not in the Motif Atlas
- Homologous match to IL_7RQB_064
- Geometric discrepancy: 0.0812
- The information below is about IL_7RQB_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12566.2
- Basepair signature
- cWW-L-tHS-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5AFI|1|A|G|1651||||P_1
5AFI|1|A|A|1652||||P_1
5AFI|1|A|G|1653||||P_1
5AFI|1|A|A|1654||||P_1
5AFI|1|A|A|1655||||P_1
5AFI|1|A|C|1656||||P_1
*
5AFI|1|A|G|2004||||P_1
5AFI|1|A|A|2005||||P_1
5AFI|1|A|C|2006||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L17
Coloring options: