IL_5AFI_070
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUAAC*GGAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 5AFI|1|A|G|1699||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AFI_070 not in the Motif Atlas
- Geometric match to IL_5J7L_308
- Geometric discrepancy: 0.0779
- The information below is about IL_5J7L_308
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_47346.2
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
5AFI|1|A|C|1686||||P_1
5AFI|1|A|G|1687||||P_1
5AFI|1|A|U|1688||||P_1
5AFI|1|A|A|1689||||P_1
5AFI|1|A|A|1690||||P_1
5AFI|1|A|C|1691||||P_1
*
5AFI|1|A|G|1696||||P_1
5AFI|1|A|G|1697||||P_1
5AFI|1|A|A|1698||||P_1
5AFI|1|A|G|1699||||P_1
5AFI|1|A|A|1700||||P_1
5AFI|1|A|A|1701||||P_1
5AFI|1|A|G|1702||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: