IL_5AFI_099
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AFI_099 not in the Motif Atlas
- Homologous match to IL_5J7L_338
- Geometric discrepancy: 0.0952
- The information below is about IL_5J7L_338
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
5AFI|1|A|C|2466||||P_1
5AFI|1|A|C|2467||||P_1
5AFI|1|A|A|2468||||P_1
5AFI|1|A|A|2469||||P_1
5AFI|1|A|G|2470||||P_1
*
5AFI|1|A|C|2480||||P_1
5AFI|1|A|G|2481||||P_1
5AFI|1|A|A|2482||||P_1
5AFI|1|A|C|2483||||P_1
5AFI|1|A|G|2484||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain M
- 50S ribosomal protein L16
Coloring options: