IL_5AFI_131
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGCC*GAUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AFI_131 not in the Motif Atlas
- Homologous match to IL_5J7L_010
- Geometric discrepancy: 0.0877
- The information below is about IL_5J7L_010
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- Minor groove platform related
- Motif group
- IL_64231.5
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
5AFI|1|a|C|132||||P_1
5AFI|1|a|U|133||||P_1
5AFI|1|a|G|134||||P_1
5AFI|1|a|C|135||||P_1
5AFI|1|a|C|136||||P_1
*
5AFI|1|a|G|227||||P_1
5AFI|1|a|A|228||||P_1
5AFI|1|a|U|229||||P_1
5AFI|1|a|G|230||||P_1
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain p
- 30S ribosomal protein S16
- Chain t
- 30S ribosomal protein S20
Coloring options: