IL_5AFI_138
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUG*CA
- Length
- 5 nucleotides
- Bulged bases
- 5AFI|1|a|U|368||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AFI_138 not in the Motif Atlas
- Homologous match to IL_5J7L_017
- Geometric discrepancy: 0.11
- The information below is about IL_5J7L_017
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
5AFI|1|a|U|367||||P_1
5AFI|1|a|U|368||||P_1
5AFI|1|a|G|369||||P_1
*
5AFI|1|a|C|392||||P_1
5AFI|1|a|A|393||||P_1
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain p
- 30S ribosomal protein S16
- Chain y
- Transfer RNA; tRNA
- Chain z
- Elongation factor Tu 2
Coloring options: