IL_5AFI_187

3D structure

PDB id

5AFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AFI_187 not in the Motif Atlas

Homologous match to IL_4V9K_064

Geometric discrepancy: 0.3071

The information below is about IL_4V9K_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5AFI|1|v|G|49||||P_1
5AFI|1|v|U|50||||P_1
5AFI|1|v|C|51||||P_1
*
5AFI|1|v|G|63||||P_1
5AFI|1|v|G|64||||P_1
5AFI|1|v|C|65||||P_1

Current chains

Chain v

P-site fMet-tRNAfMet

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27